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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
BLCA rs12290763 chr11:30338305 A/G PRMT3 chr11:20409076-20530840:+ -0.6 -6.59 1.47E-10 Box Plot
BLCA rs12292039 chr11:77653789 C/G INTS4L1 chr7:64601603-64694600:+ 0.5 6.88 2.45E-11 Box Plot
BLCA rs12293597 chr11:77645505 A/G INTS4L1 chr7:64601603-64694600:+ 0.49 6.84 3.23E-11 Box Plot
BLCA rs12295321 chr11:45563577 A/G AMBRA1 chr11:46417964-46615675:- 0.67 6.11 2.5E-9 Box Plot
BLCA rs12295321 chr11:45563577 A/G API5 chr11:43333513-43366079:+ 0.7 7.44 6.8E-13 Box Plot
BLCA rs12295321 chr11:45563577 A/G ARFGAP2 chr11:47185850-47198676:- 0.68 6.73 6.16E-11 Box Plot
BLCA rs12295321 chr11:45563577 A/G NDUFS3 chr11:47586888-47606114:+ 0.54 6.16 1.83E-9 Box Plot
BLCA rs12327993 chr2:144935972 A/G EPC2 chr2:149402009-149545137:+ -0.7 -6.59 1.48E-10 Box Plot
BLCA rs12327993 chr2:144935972 A/G ORC4L chr2:148691733-148779136:- -0.98 -7.28 1.92E-12 Box Plot
BLCA rs12327993 chr2:144935972 A/G PRPF40A chr2:153508107-153574511:- -0.73 -6.7 7.56E-11 Box Plot
BLCA rs12331553 chr4:166994597 A/G C4orf41 chr4:184580446-184634744:+ 0.76 5.97 5.37E-9 Box Plot
BLCA rs12339470 chr9:90795821 C/G ALG2 chr9:101978708-101984238:- -0.8 -6.65 9.87E-11 Box Plot
BLCA rs12339470 chr9:90795821 C/G C9orf6 chr9:111696673-111703235:+ -0.65 -6.07 3.05E-9 Box Plot
BLCA rs12339470 chr9:90795821 C/G ISCA1P1 chr5:62072704-62073090:- -0.66 -6.28 9.27E-10 Box Plot
BLCA rs12339470 chr9:90795821 C/G NAA35 chr9:88556061-88637213:+ -0.61 -6.23 1.25E-9 Box Plot